ENSGALG00000012677


Gallus gallus

Features
Gene ID: ENSGALG00000012677
  
Biological name :CDKAL1
  
Synonyms : CDK5 regulatory subunit associated protein 1 like 1 / CDKAL1
  
Possible biological names infered from orthology : Q5VV42 / Q91WE6 / Threonylcarbamoyladenosine tRNA methylthiotransferase
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 59246188
Gene end: 59622261
  
Corresponding Affymetrix probe sets: Gga.5451.1.S1_at (Chicken Array)   Gga.5451.2.S1_a_at (Chicken Array)   GgaAffx.23974.1.S1_at (Chicken Array)   GgaAffx.23974.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020659
Ensembl peptide - ENSGALP00000060816
Ensembl peptide - ENSGALP00000049045
NCBI entrez gene - 420823     See in Manteia.
RefSeq - XM_004939622
RefSeq - XM_418914
swissprot - E1BRH0
swissprot - A0A1L1RPT7
swissprot - A0A1D5P8J7
Ensembl - ENSGALG00000012677
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01090785.1ENSDARG00000110572Danio rerio
 cdkal1ENSDARG00000104848Danio rerio
 CDKAL1ENSG00000145996Homo sapiens
 Cdkal1ENSMUSG00000006191Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDK5RAP1 / CDK5 regulatory subunit associated protein 1 / Q8BTW8* / Q96SZ6*ENSGALG0000000673819


Protein motifs (from Interpro)
Interpro ID Name
 IPR002792  TRAM domain
 IPR005839  Methylthiotransferase
 IPR006466  MiaB-like tRNA modifying enzyme, archaeal-type
 IPR006638  Elp3/MiaB/NifB
 IPR007197  Radical SAM
 IPR013848  Methylthiotransferase, N-terminal
 IPR020612  Methylthiotransferase, conserved site
 IPR023404  Radical SAM, alpha/beta horseshoe


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006400 tRNA modification IEA
 biological_processGO:0035600 tRNA methylthiolation IEA
 biological_processGO:1990145 maintenance of translational fidelity IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0035598 N6-threonylcarbomyladenosine methylthiotransferase activity IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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