ENSGALG00000015170


Gallus gallus

Features
Gene ID: ENSGALG00000015170
  
Biological name :VPS13A
  
Synonyms : vacuolar protein sorting-associated protein 13A / VPS13A
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 37602176
Gene end: 37704825
  
Corresponding Affymetrix probe sets: Gga.10800.1.S1_s_at (Chicken Array)   GgaAffx.25354.1.S1_at (Chicken Array)   GgaAffx.9654.1.S1_at (Chicken Array)   GgaAffx.9654.2.S1_s_at (Chicken Array)   GgaAffx.9655.1.S1_at (Chicken Array)   GgaAffx.9657.1.S1_at (Chicken Array)   GgaAffx.9658.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024437
Ensembl peptide - ENSGALP00000052983
NCBI entrez gene - 427050     See in Manteia.
RefSeq - XM_015280272
RefSeq - NM_001277836
RefSeq - XM_015280270
RefSeq - XM_015280271
RefSeq Peptide - NP_001264765
swissprot - E1C549
swissprot - A0A1D5PJI9
Ensembl - ENSGALG00000015170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps13aENSDARG00000039225Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VPS13C / vacuolar protein sorting 13 homolog C / Q709C8* / Q8BX70* / vacuolar protein sorting 13C*ENSGALG0000000370543
VPS13D / vacuolar protein sorting 13 homolog D / Q5THJ4* / vacuolar protein sorting 13D*ENSGALG0000003477720
VPS13B / vacuolar protein sorting 13 homolog B / Q7Z7G8* / Q80TY5* / vacuolar protein sorting 13B*ENSGALG0000004117910
ENSGALG000000447922
ENSGALG000000460930


Protein motifs (from Interpro)
Interpro ID Name
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR015412  Autophagy-related, C-terminal
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr