ENSGALG00000034777


Gallus gallus

Features
Gene ID: ENSGALG00000034777
  
Biological name :VPS13D
  
Synonyms : vacuolar protein sorting 13 homolog D / VPS13D
  
Possible biological names infered from orthology : Q5THJ4 / vacuolar protein sorting 13D
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 5363565
Gene end: 5448674
  
Corresponding Affymetrix probe sets: Gga.12200.1.S1_at (Chicken Array)   GgaAffx.26156.1.S1_at (Chicken Array)   GgaAffx.26156.3.S1_s_at (Chicken Array)   GgaAffx.2669.1.S1_at (Chicken Array)   GgaAffx.2741.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044558
Ensembl peptide - ENSGALP00000053631
NCBI entrez gene - 419481     See in Manteia.
RefSeq - XM_015297194
RefSeq - XM_015297192
RefSeq - XM_015297193
RefSeq - XM_015297188
RefSeq - XM_015297189
RefSeq - XM_015297191
swissprot - A0A1D5PLB6
swissprot - A0A1D5NW25
Ensembl - ENSGALG00000034777
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps13dENSDARG00000017986Danio rerio
 Q5THJ4ENSG00000048707Homo sapiens
 Vps13dENSMUSG00000020220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VPS13C / vacuolar protein sorting 13 homolog C / Q709C8* / Q8BX70* / vacuolar protein sorting 13C*ENSGALG0000000370518
VPS13A / vacuolar protein sorting-associated protein 13A ENSGALG0000001517014
VPS13B / vacuolar protein sorting 13 homolog B / Q7Z7G8* / Q80TY5* / vacuolar protein sorting 13B*ENSGALG000000411799
ENSGALG000000447921
ENSGALG000000460930


Protein motifs (from Interpro)
Interpro ID Name
 IPR009060  UBA-like superfamily
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR015940  Ubiquitin-associated domain
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr