ENSGALG00000015589


Gallus gallus

Features
Gene ID: ENSGALG00000015589
  
Biological name :MSH3
  
Synonyms : MSH3 / mutS homolog 3
  
Possible biological names infered from orthology : P20585
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 63936017
Gene end: 64052808
  
Corresponding Affymetrix probe sets: Gga.18542.1.S1_at (Chicken Array)   GgaAffx.9932.1.S1_at (Chicken Array)   GgaAffx.9933.1.S1_at (Chicken Array)   GgaAffx.9938.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025089
NCBI entrez gene - 427318     See in Manteia.
RefSeq - XM_003643079
swissprot - E1C1F8
Ensembl - ENSGALG00000015589
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 msh3ENSDARG00000063276Danio rerio
 MSH3ENSG00000113318Homo sapiens
 Msh3ENSMUSG00000014850Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000432  DNA mismatch repair protein MutS, C-terminal
 IPR007695  DNA mismatch repair protein MutS-like, N-terminal
 IPR007696  DNA mismatch repair protein MutS, core
 IPR007860  DNA mismatch repair protein MutS, connector domain
 IPR016151  DNA mismatch repair protein MutS, N-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006298 mismatch repair IBA
 biological_processGO:0016447 somatic recombination of immunoglobulin gene segments IBA
 biological_processGO:0043570 maintenance of DNA repeat elements IEA
 biological_processGO:0045910 negative regulation of DNA recombination IEA
 biological_processGO:0051096 positive regulation of helicase activity IEA
 cellular_componentGO:0032302 MutSbeta complex IEA
 molecular_functionGO:0000403 Y-form DNA binding IBA
 molecular_functionGO:0000404 heteroduplex DNA loop binding IBA
 molecular_functionGO:0000406 double-strand/single-strand DNA junction binding IBA
 molecular_functionGO:0003684 damaged DNA binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IBA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030983 mismatched DNA binding IEA
 molecular_functionGO:0032139 dinucleotide insertion or deletion binding IEA
 molecular_functionGO:0032142 single guanine insertion binding IEA
 molecular_functionGO:0032181 dinucleotide repeat insertion binding IEA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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