ENSDARG00000063276


Danio rerio

Features
Gene ID: ENSDARG00000063276
  
Biological name :msh3
  
Synonyms : msh3 / mutS homolog 3 (E. coli)
  
Possible biological names infered from orthology : mutS homolog 3 / P20585
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 51248784
Gene end: 51440541
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000086717
Ensembl peptide - ENSDARP00000148184
Ensembl peptide - ENSDARP00000139816
NCBI entrez gene - 565400     See in Manteia.
RefSeq - NM_001109714
RefSeq - XM_009301782
RefSeq Peptide - NP_001103184
swissprot - A0A0R4IUP6
swissprot - A2CEA8
swissprot - A0A288CFS8
ZFIN ID - ZDB-GENE-060526-307
Ensembl - ENSDARG00000063276
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MSH3ENSGALG00000015589Gallus gallus
 MSH3ENSG00000113318Homo sapiens
 Msh3ENSMUSG00000014850Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000432  DNA mismatch repair protein MutS, C-terminal
 IPR007695  DNA mismatch repair protein MutS-like, N-terminal
 IPR007696  DNA mismatch repair protein MutS, core
 IPR007860  DNA mismatch repair protein MutS, connector domain
 IPR007861  DNA mismatch repair protein MutS, clamp
 IPR016151  DNA mismatch repair protein MutS, N-terminal
 IPR017261  DNA mismatch repair protein MutS/MSH
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006298 mismatch repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0030983 mismatched DNA binding IEA


Pathways (from Reactome)
Pathway description
Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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