ENSGALG00000029572


Gallus gallus

Features
Gene ID: ENSGALG00000029572
  
Biological name :TOP1MT
  
Synonyms : DNA topoisomerase I, mitochondrial / TOP1MT
  
Possible biological names infered from orthology : Mus musculus DNA topoisomerase 1, mitochondrial (Top1mt), transcript variant 2, mRNA. / Q8R4U6 / Q969P6
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 148535366
Gene end: 148546919
  
Corresponding Affymetrix probe sets: Gga.7630.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048985
NCBI entrez gene - 408025     See in Manteia.
RefSeq - XM_015283168
RefSeq - NM_001001300
RefSeq - XM_015283166
RefSeq - XM_015283167
RefSeq Peptide - NP_001001300
swissprot - A0A1D5P8D8
Ensembl - ENSGALG00000029572
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 top1mtENSDARG00000104809Danio rerio
 Q969P6ENSG00000184428Homo sapiens
 Q8R4U6ENSMUSG00000000934Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TOP1 / DNA topoisomerase 1 / P11387* / Q04750* / DNA topoisomerase I*ENSGALG0000000368169


Protein motifs (from Interpro)
Interpro ID Name
 IPR001631  DNA topoisomerase I
 IPR008336  DNA topoisomerase I, DNA binding, eukaryotic-type
 IPR011010  DNA breaking-rejoining enzyme, catalytic core
 IPR013030  DNA topoisomerase I, DNA binding, N-terminal domain 2
 IPR013034  DNA topoisomerase I, DNA binding, N-terminal domain 1
 IPR013499  DNA topoisomerase I, eukaryotic-type
 IPR013500  DNA topoisomerase I, catalytic core, eukaryotic-type
 IPR014711  DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
 IPR014727  DNA topoisomerase I, catalytic core, alpha/beta subdomain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006265 DNA topological change IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0042645 mitochondrial nucleoid IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003917 DNA topoisomerase type I activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr