ENSGALG00000031368


Gallus gallus

Features
Gene ID: ENSGALG00000031368
  
Biological name :PHF12
  
Synonyms : PHD finger protein 12 / PHF12
  
Possible biological names infered from orthology : Q5SPL2 / Q96QT6
  
Species: Gallus gallus
  
Chr. number: 19
Strand: -1
Band:
Gene start: 5881846
Gene end: 5910371
  
Corresponding Affymetrix probe sets: GgaAffx.20618.1.S1_s_at (Chicken Array)   GgaAffx.2499.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049450
Ensembl peptide - ENSGALP00000053840
NCBI entrez gene - 417580     See in Manteia.
RefSeq - XM_015296079
RefSeq - XM_015296078
swissprot - A0A1D5PLW9
swissprot - A0A1D5P9P5
Ensembl - ENSGALG00000031368
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 phf12aENSDARG00000074303Danio rerio
 phf12bENSDARG00000075509Danio rerio
 PHF12ENSG00000109118Homo sapiens
 Phf12ENSMUSG00000037791Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000253  Forkhead-associated (FHA) domain
 IPR001965  Zinc finger, PHD-type
 IPR008984  SMAD/FHA domain superfamily
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR031966  PHD finger protein 12, MRG binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016580 Sin3 complex IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 molecular_functionGO:0001222 transcription corepressor binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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