ENSGALG00000031424


Gallus gallus

Features
Gene ID: ENSGALG00000031424
  
Biological name :SDC2
  
Synonyms : SDC2 / syndecan-2 precursor
  
Possible biological names infered from orthology : P34741 / P43407 / syndecan 2
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 127477270
Gene end: 127534478
  
Corresponding Affymetrix probe sets: Gga.4675.1.S1_at (Chicken Array)   Gga.4675.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052990
NCBI entrez gene - 374102     See in Manteia.
RefSeq - NM_001001462
RefSeq - XM_015282910
RefSeq Peptide - NP_001001462
swissprot - Q8JIY0
Ensembl - ENSGALG00000031424
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdc2ENSDARG00000002731Danio rerio
 SDC2ENSG00000169439Homo sapiens
 Sdc2ENSMUSG00000022261Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SDC4 / P49416 / Syndecan-4 / O35988* / P31431*ENSGALG0000000393236
SDC3 / syndecan-3 precursor / O75056* / Q64519* / syndecan 3*ENSGALG0000003518436
SDC1 / syndecan 1 / P18827* / P18828*ENSGALG0000001648028


Protein motifs (from Interpro)
Interpro ID Name
 IPR001050  Syndecan
 IPR003585  Neurexin/syndecan/glycophorin C
 IPR027789  Syndecan/Neurexin domain
 IPR030479  Syndecan, conserved site
 IPR031201  Syndecan-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048814 regulation of dendrite morphogenesis IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 molecular_functionGO:0030165 PDZ domain binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation
Syndecan interactions
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
EPHB-mediated forward signaling
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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