ENSGALG00000035563


Gallus gallus

Features
Gene ID: ENSGALG00000035563
  
Biological name :USP6NL
  
Synonyms : USP6NL / USP6 N-terminal-like protein
  
Possible biological names infered from orthology : Q80XC3 / Q92738 / USP6 N-terminal like
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 6033346
Gene end: 6143773
  
Corresponding Affymetrix probe sets: Gga.1584.1.S1_s_at (Chicken Array)   GgaAffx.4172.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000057857
Ensembl peptide - ENSGALP00000050467
NCBI entrez gene - 419104     See in Manteia.
RefSeq - XM_015296057
RefSeq - NM_001030840
RefSeq - XM_015295969
RefSeq - XM_015296018
RefSeq - XM_015295824
RefSeq - XM_015295860
RefSeq - XM_015295914
RefSeq Peptide - NP_001026011
swissprot - A0A1D5PCH8
Ensembl - ENSGALG00000035563
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp6nlENSDARG00000022187Danio rerio
 Q92738ENSG00000148429Homo sapiens
 Q80XC3ENSMUSG00000039046Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A6NDS4* / B9A6J9* / TBC1D3* / P0C7X1* / Q2M2D7* / Q6DHY5* / Q6IPX1* / Q8IZP1* / Q86UD7* / TBC1D3F* / TBC1D3H* / TBC1D3G* / TBC1D3I* / TBC1D3K* / TBC1D3L* / TBC1D26* / TBC1D28* / TBC1D3B* / ...ENSGALG0000003922134
P58802* / Q9BXI6* / TBC1D10A* / AC004997.1* / TBC1 domain family member 10A*ENSGALG0000000795414
GRTP1 / growth hormone regulated TBC protein 1 / Q5TC63* / Q9D3N8*ENSGALG000000168288


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007030 Golgi organization IEA
 biological_processGO:0019068 virion assembly IEA
 biological_processGO:0035526 retrograde transport, plasma membrane to Golgi IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0048227 plasma membrane to endosome transport IEA
 biological_processGO:1903358 regulation of Golgi organization IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005096 GTPase activator activity IEA
 molecular_functionGO:0017137 Rab GTPase binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000005021 RAB43 / RAB43, member RAS oncogene family / Q86YS6* / Q8CG50*  / complex / reaction






 

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