ENSGALG00000038954


Gallus gallus

Features
Gene ID: ENSGALG00000038954
  
Biological name :LSM11
  
Synonyms : LSM11 / LSM11, U7 small nuclear RNA associated
  
Possible biological names infered from orthology : P83369 / Q8BUV6 / U7 snRNA-associated Sm-like protein LSm11
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 11299573
Gene end: 11303669
  
Corresponding Affymetrix probe sets: Gga.12781.1.S1_at (Chicken Array)   GgaAffx.25956.1.S1_at (Chicken Array)   GgaAffx.25956.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045562
NCBI entrez gene - 416241     See in Manteia.
RefSeq - XM_015293898
swissprot - A0A1D5NYV1
Ensembl - ENSGALG00000038954
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm11ENSDARG00000090854Danio rerio
 LSM11ENSG00000155858Homo sapiens
 Lsm11ENSMUSG00000044847Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IEA
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005683 U7 snRNP IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IEA
 molecular_functionGO:0071209 U7 snRNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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