ENSMUSG00000044847


Mus musculus

Features
Gene ID: ENSMUSG00000044847
  
Biological name :Lsm11
  
Synonyms : Lsm11 / Q8BUV6 / U7 snRNA-associated Sm-like protein LSm11
  
Possible biological names infered from orthology : LSM11, U7 small nuclear RNA associated / P83369
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B1.1
Gene start: 45928269
Gene end: 45944935
  
Corresponding Affymetrix probe sets: 10385365 (MoGene1.0st)   1439578_at (Mouse Genome 430 2.0 Array)   1453755_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000057343
Ensembl peptide - ENSMUSP00000117531
NCBI entrez gene - 72290     See in Manteia.
MGI - MGI:1919540
RefSeq - XM_011249271
RefSeq - NM_028185
RefSeq Peptide - NP_082461
swissprot - Q5SUH5
swissprot - Q8BUV6
Ensembl - ENSMUSG00000044847
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm11ENSDARG00000090854Danio rerio
 LSM11ENSGALG00000038954Gallus gallus
 LSM11ENSG00000155858Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR034109  Sm-like protein Lsm11, middle domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006398 mRNA 3"-end processing by stem-loop binding and cleavage IDA
 biological_processGO:1900087 positive regulation of G1/S transition of mitotic cell cycle ISS
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005683 U7 snRNP ISO
 cellular_componentGO:0005697 telomerase holoenzyme complex ISO
 cellular_componentGO:0016604 nuclear body ISO
 cellular_componentGO:0071204 histone pre-mRNA 3"end processing complex IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0071209 U7 snRNA binding IBA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
SLBP independent Processing of Histone Pre-mRNAs
SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0005561 increased mean corpuscular hemoglobin "greater than the average levels of hemoglobin contained in an erythrocyte" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Kptntm1a(EUCOMM)Wtsi/Kptntm1a(EUCOMM)Wtsi
Genetic Background: B6JTyr;B6N-Kptntm1a(EUCOMM)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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