ENSMUSG00000000581


Mus musculus

Features
Gene ID: ENSMUSG00000000581
  
Biological name :C1d
  
Synonyms : C1d / Mus musculus C1D nuclear receptor co-repressor (C1d), transcript variant 2, mRNA. / O35473
  
Possible biological names infered from orthology : C1D nuclear receptor corepressor / Q13901
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: A3.1
Gene start: 17257579
Gene end: 17269176
  
Corresponding Affymetrix probe sets: 10374442 (MoGene1.0st)   1416886_at (Mouse Genome 430 2.0 Array)   1416887_at (Mouse Genome 430 2.0 Array)   1448505_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000000594
Ensembl peptide - ENSMUSP00000121134
NCBI entrez gene - 57316     See in Manteia.
MGI - MGI:1927354
RefSeq - XM_006514762
RefSeq - NM_001330649
RefSeq - NM_020558
RefSeq Peptide - NP_001317578
RefSeq Peptide - NP_065583
swissprot - O35473
swissprot - A0A0A0MQK7
Ensembl - ENSMUSG00000000581
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 c1dENSDARG00000021112Danio rerio
 C1DENSGALG00000008765Gallus gallus
 C1DENSG00000197223Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007146  Sas10/Utp3/C1D
 IPR011082  Exosome-associated factor Rrp47/DNA strand repair C1D


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000460 maturation of 5.8S rRNA IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 cellular_componentGO:0000178 exosome (RNase complex) IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0017053 transcriptional repressor complex IDA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003714 transcription corepressor activity IDA
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016922 nuclear receptor binding IDA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000016018 Q9CZU3 / Skiv2l2 / Superkiller viralicidic activity 2-like 2 / MTREX* / P42285* / Mtr4 exosome RNA helicase*  / complex
 ENSMUSG00000017264 P56960 / Exosc10 / Mus musculus exosome component 10 (Exosc10), transcript variant 5, mRNA. / Q01780* / exosome component 10*  / complex
 ENSMUSG00000031843 Q9D1Q1 / Mphosph6 / Mus musculus M phase phosphoprotein 6 (Mphosph6), transcript variant 3, mRNA. / Q99547* / M-phase phosphoprotein 6*  / complex






 

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