ENSMUSG00000020706


Mus musculus

Features
Gene ID: ENSMUSG00000020706
  
Biological name :Ftsj3
  
Synonyms : Ftsj3 / pre-rRNA processing protein FTSJ3 / Q9DBE9
  
Possible biological names infered from orthology : FtsJ RNA methyltransferase homolog 3 / Q8IY81
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E1
Gene start: 106249142
Gene end: 106256079
  
Corresponding Affymetrix probe sets: 10392098 (MoGene1.0st)   1451026_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000021048
NCBI entrez gene - 56095     See in Manteia.
MGI - MGI:1860295
RefSeq - NM_025310
RefSeq Peptide - NP_079586
swissprot - Q9DBE9
Ensembl - ENSMUSG00000020706
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ftsj3ENSDARG00000104938Danio rerio
 FTSJ3ENSGALG00000032993Gallus gallus
 FTSJ3ENSG00000108592Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002877  Ribosomal RNA methyltransferase FtsJ domain
 IPR012920  Ribosomal RNA methyltransferase, Spb1, C-terminal
 IPR015507  Ribosomal RNA large subunit methyltransferase E
 IPR024576  Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381
 IPR028589  AdoMet-dependent rRNA methyltransferase, Spb1
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0001510 RNA methylation IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0031167 rRNA methylation IBA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0030687 preribosome, large subunit precursor IBA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008649 rRNA methyltransferase activity IEA
 molecular_functionGO:0008650 rRNA (uridine-2"-O-)-methyltransferase activity IBA
 molecular_functionGO:0016435 rRNA (guanine) methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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