ENSMUSG00000021133


Mus musculus

Features
Gene ID: ENSMUSG00000021133
  
Biological name :Susd6
  
Synonyms : Q8BGE4 / Susd6 / sushi domain containing 6
  
Possible biological names infered from orthology : Q92537
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: C3
Gene start: 80790510
Gene end: 80880835
  
Corresponding Affymetrix probe sets: 10396919 (MoGene1.0st)   1454606_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000064961
Ensembl peptide - ENSMUSP00000151831
NCBI entrez gene - 217684     See in Manteia.
MGI - MGI:2444661
RefSeq - NM_178682
RefSeq - NM_001242419
RefSeq Peptide - NP_001229348
RefSeq Peptide - NP_848797
swissprot - Q8BGE4
swissprot - Q8C0M5
Ensembl - ENSMUSG00000021133
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 susd6ENSDARG00000030116Danio rerio
 SUSD6ENSGALG00000009428Gallus gallus
 SUSD6ENSG00000100647Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Susd4 / Q8BH32 / Mus musculus sushi domain containing 4 (Susd4), transcript variant 4, mRNA. / Q5VX71* / sushi domain containing 4*ENSMUSG0000003857633


Protein motifs (from Interpro)
Interpro ID Name
 IPR000436  Sushi/SCR/CCP domain
 IPR013544  Domain of unknown function DUF1725
 IPR035976  Sushi/SCR/CCP superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0008219 cell death IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Susd6tm1.1Geno/Susd6+,Trp53tm1Tyj/Trp53tm1Tyj
Genetic Background: involves: C57BL/6J

Allelic Composition: Susd6tm1.1Geno/Susd6tm1.1Geno,Trp53tm1Tyj/Trp53tm1Tyj
Genetic Background: involves: C57BL/6J

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: H2afvTg(Wnt1-cre)11Rth/0,Wnt5atm1Amc/Wnt5atm1.1Krvl
Genetic Background: involves: 129S6/SvEvTac * 129S7/SvEvBrd * C57BL/6 * CBA/J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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