ENSMUSG00000021500


Mus musculus

Features
Gene ID: ENSMUSG00000021500
  
Biological name :Ddx46
  
Synonyms : Ddx46 / Probable ATP-dependent RNA helicase DDX46 / Q569Z5
  
Possible biological names infered from orthology : DEAD-box helicase 46 / Q7L014
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: B1
Gene start: 55635027
Gene end: 55681256
  
Corresponding Affymetrix probe sets: 10405511 (MoGene1.0st)   1424569_at (Mouse Genome 430 2.0 Array)   1424570_at (Mouse Genome 430 2.0 Array)   1424571_at (Mouse Genome 430 2.0 Array)   1455103_at (Mouse Genome 430 2.0 Array)   1457744_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000097078
Ensembl peptide - ENSMUSP00000133245
Ensembl peptide - ENSMUSP00000153328
Ensembl peptide - ENSMUSP00000155176
NCBI entrez gene - 212880     See in Manteia.
MGI - MGI:1920895
RefSeq - XM_006517202
RefSeq - NM_001282055
RefSeq Peptide - NP_001268984
swissprot - Q569Z5
swissprot - F8WHR6
Ensembl - ENSMUSG00000021500
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx46ENSDARG00000099458Danio rerio
 DDX46ENSGALG00000006404Gallus gallus
 DDX46ENSG00000145833Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016607 nuclear speck ISO
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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