ENSMUSG00000024827


Mus musculus

Features
Gene ID: ENSMUSG00000024827
  
Biological name :Gldc
  
Synonyms : Gldc / Glycine dehydrogenase (decarboxylating), mitochondrial / Q91W43
  
Possible biological names infered from orthology : glycine decarboxylase / P23378
  
Species: Mus musculus
  
Chr. number: 19
Strand: -1
Band: C1
Gene start: 30098449
Gene end: 30175418
  
Corresponding Affymetrix probe sets: 10466976 (MoGene1.0st)   1416049_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000025778
NCBI entrez gene - 104174     See in Manteia.
MGI - MGI:1341155
RefSeq - NM_138595
RefSeq Peptide - NP_613061
swissprot - Q91W43
Ensembl - ENSMUSG00000024827
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gldcENSDARG00000035120Danio rerio
 GLDCENSGALG00000015053Gallus gallus
 GLDCENSG00000178445Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001597  Aromatic amino acid beta-eliminating lyase/threonine aldolase
 IPR003437  Glycine dehydrogenase (decarboxylating)
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase
 IPR020581  Glycine cleavage system P protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006520 cellular amino acid metabolic process IEA
 biological_processGO:0006544 glycine metabolic process IEA
 biological_processGO:0006546 glycine catabolic process ISO
 biological_processGO:0019464 glycine decarboxylation via glycine cleavage system IEA
 biological_processGO:0036255 response to methylamine ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:1903442 response to lipoic acid ISS
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005739 mitochondrion ISO
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005960 glycine cleavage complex IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004375 glycine dehydrogenase (decarboxylating) activity ISO
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016594 glycine binding IEA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070280 pyridoxal binding ISS


Pathways (from Reactome)
Pathway description
Glycine degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000087 absent mandible "missing the lower bony framework of the mouth where the inferior teeth are held" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0000111 cleft palate "congenital fissure of the tissues normally uniting to form the palate" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:49840]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0000284 double outlet right ventricle "both the aorta and the pulmonary trunk originate from the right ventricle, usually in conjunction with a ventricular septal defect" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:67826]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0000439 enlarged skull 
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0000440 domed skull 
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0000445 short snout "reduced length of the anterior facial part of the muzzle" [J:53370]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0000519 hydronephrosis "dilation of the pelvis and calices of one or both kidneys" [J:56641]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0000914 exencephaly "neurocranial defects resulting in exposure or extrusion of the brain" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:49840]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0000928 incomplete cephalic closure "arrest of the fusion of the cephalic neural folds" [J:12622]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0000929 open neural tube "incomplete invagination and fusion of the neuroepithelial layer in early development" [MGI:CLS, J:53370, J:62571]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0001293 anophthalmia "congenital absence of all tissues of the eyes" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CML, J:71979]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0001891 hydroencephaly "excessive accumulation of cerebrospinal fluid in the brain, especially the cerebral ventricles, often leading to increased brain size and other brain trauma" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, MeSH:National Library of Medicine - Medical Subject Headings, 2003]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0001915 intracranial hemorrhage "bleeding within the skull, including hemorrhage into the brain and within the cranial epidural, subdural, and subarachnoid spaces" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0002151 abnormal neural tube morphology/development "anomalous structure of or development of the embryonic neural tube resulting in structural anomaly" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0003052 omphalocele "protrusion of abdominal viscera at the base of the umbilical cord, with a covering membranous sac of peritoneum-amnion" [Stedman s Medical Dictionary, 27th edition:ISBN 0-683-40008-8, MeSH:National Library of Medicine - Medical Subject Headings, 2003, ava:Anna V. Anagnostopoulos, Mouse Genome Informatics Curator]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0003675 kidney cysts "abnormal membranous sacs in any portion of the pair of organs responsible for urine secretion" [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0003984 embryonic growth retardation "slow or limited development before birth" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0004261 abnormal embryonic neuroepithelium morphology "any structural anomaly in the epithelial cell layer that lines the neural tube and develops into the nervous system and into the neural crest cells" [ISBN:0838580343 "Kandel ER, et al. Principles of Neural Science, 3rd edition", MGI:monikat "Monika Tomczuk, Mouse Genome Informatics Curator"]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0005170 cleft lip "defect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0008770 decreased survivor rate "a smaller percentage of organisms than expected survive to adulthood and have a lifespan similar to controls" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0009642 abnormal blood homeostasis "anomaly in the processes involved in the maintenance of an internal equilibrium of various functions or chemical or protein composition of the blood" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0009643 abnormal urine homeostasis "anomaly in the processes involved in the maintenance of an internal equilibrium of various functions and chemical or protein composition of the urine" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0010402 ventricular septal defect "abnormal communications between the two lower chambers of the heart, including such defects in the perimembranous, inlet, outlet (infundibular), central muscular, marginal muscular, or apical muscular regions" [MESH:C14.240.400.560.540]
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Allelic Composition: Tll1b2b2476Clo/Tll1b2b2476Clo
Genetic Background: C57BL/6J-Tll1b2b2476Clo

 MP:0011086 partial postnatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms anytime between the neonatal period and weaning age (Mus: P1 to approximately 3 weeks of age)" [MGI:csmith]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Foxo3tm1.1(KOMP)Vlcg/Foxo3tm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Foxo3tm1.1(KOMP)Vlcg/J

 MP:0011230 abnormal folic acid level "any anomaly in the concentration of the vitamin B family member that stimulates the hematopoietic system, is present in the liver and kidney and is found in mushrooms, spinach, yeast, green leaves, and grasses, and is used in the treatment and prevention of folate deficiencies and megaloblastic anemia" [MESH:D03.438.733.631.400]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

 MP:0011380 enlarged brain ventricle "increased size of one or more of the four communicating cavities within the brain that are continuous with the central canal of the spinal cord" [MGI:smb]
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Allelic Composition: Sdcbptm1c(KOMP)Wtsi/Sdcbp+,Tsc2tm1Tno/Tsc2+,Tg(Camk2a-cre)2Gsc/0
Genetic Background: involves: 129S4/SvJae * C57BL/6N * FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000024827 Gldc / Q91W43 / Glycine dehydrogenase (decarboxylating), mitochondrial / P23378* / glycine decarboxylase*  / complex
 ENSMUSG00000034424 Gcsh / Q91WK5 / Glycine cleavage system H protein, mitochondrial / P23434* / AC092718.3* / AC092718.8* / glycine cleavage system protein H*  / reaction






 

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