ENSMUSG00000026166


Mus musculus

Features
Gene ID: ENSMUSG00000026166
  
Biological name :Ccl20
  
Synonyms : Ccl20 / C-C motif chemokine 20 / O89093
  
Possible biological names infered from orthology : C-C motif chemokine ligand 20 / P78556
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: C5
Gene start: 83116766
Gene end: 83119167
  
Corresponding Affymetrix probe sets: 10347888 (MoGene1.0st)   1422029_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000027351
Ensembl peptide - ENSMUSP00000109064
Ensembl peptide - ENSMUSP00000139923
NCBI entrez gene - 20297     See in Manteia.
MGI - MGI:1329031
RefSeq - NM_001159738
RefSeq - NM_016960
RefSeq Peptide - NP_001153210
RefSeq Peptide - NP_058656
swissprot - Q642U4
swissprot - O89093
swissprot - Q54AI7
swissprot - F8WHA7
Ensembl - ENSMUSG00000026166
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccl20a.3ENSDARG00000101040Danio rerio
 ccl20bENSDARG00000094511Danio rerio
 FP236331.1ENSDARG00000112125Danio rerio
 CCL20ENSGALG00000003003Gallus gallus
 CCL20ENSG00000115009Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000827  CC chemokine, conserved site
 IPR001811  Chemokine interleukin-8-like domain
 IPR034133  Chemokine CC, DCCL motif-cointaining domain
 IPR036048  Chemokine interleukin-8-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002548 monocyte chemotaxis IBA
 biological_processGO:0006935 chemotaxis ISO
 biological_processGO:0006954 inflammatory response IBA
 biological_processGO:0006955 immune response IEA
 biological_processGO:0007186 G-protein coupled receptor signaling pathway IBA
 biological_processGO:0010469 regulation of signaling receptor activity IEA
 biological_processGO:0030593 neutrophil chemotaxis IBA
 biological_processGO:0035584 calcium-mediated signaling using intracellular calcium source ISS
 biological_processGO:0043547 positive regulation of GTPase activity IBA
 biological_processGO:0048247 lymphocyte chemotaxis IBA
 biological_processGO:0060326 cell chemotaxis ISS
 biological_processGO:0070098 chemokine-mediated signaling pathway IBA
 biological_processGO:0070374 positive regulation of ERK1 and ERK2 cascade IBA
 biological_processGO:0071346 cellular response to interferon-gamma IBA
 biological_processGO:0071347 cellular response to interleukin-1 IBA
 biological_processGO:0071356 cellular response to tumor necrosis factor IBA
 biological_processGO:0072678 T cell migration IDA
 biological_processGO:0072679 thymocyte migration IDA
 biological_processGO:2000406 positive regulation of T cell migration ISO
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0005125 cytokine activity IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008009 chemokine activity IBA
 molecular_functionGO:0031731 CCR6 chemokine receptor binding IDA


Pathways (from Reactome)
Pathway description
Chemokine receptors bind chemokines
G alpha (i) signalling events


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000040899 Ccr6 / O54689 / Mus musculus chemokine (C-C motif) receptor 6 (Ccr6), transcript variant 7, mRNA. / P51684* / C-C motif chemokine receptor 6*  / complex / reaction






 

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