ENSMUSG00000028555


Mus musculus
proteinTtc39atetratricopeptiderepeattetratricopeptide-likehelicaldomainsuperfamilyinclusionbodyclearanceimlbiologicalprocesscellularcomponentmolecularfunctionbinding

Features
Gene ID: ENSMUSG00000028555
  
Biological name :Ttc39a
  
Synonyms : A2ACP1 / tetratricopeptide repeat domain 39A / Ttc39a
  
Possible biological names infered from orthology : Q5SRH9
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: C7
Gene start: 109406623
Gene end: 109444745
  
Corresponding Affymetrix probe sets: 10506968 (MoGene1.0st)   1455162_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000102230
Ensembl peptide - ENSMUSP00000102229
Ensembl peptide - ENSMUSP00000117621
Ensembl peptide - ENSMUSP00000121779
Ensembl peptide - ENSMUSP00000118672
Ensembl peptide - ENSMUSP00000066334
NCBI entrez gene - 230603     See in Manteia.
MGI - MGI:2444350
RefSeq - XM_011240488
RefSeq - NM_153392
RefSeq - XM_006502994
RefSeq - XM_006502995
RefSeq - XM_006502996
RefSeq - XM_006502997
RefSeq - XM_006502998
RefSeq - XM_006502999
RefSeq - NM_001145948
RefSeq Peptide - NP_001139420
RefSeq Peptide - NP_700441
swissprot - A0A0A0MQI5
swissprot - A2ACP1
swissprot - A0A0A0MQC5
swissprot - X1WI14
swissprot - A0A0A0MQL1
Ensembl - ENSMUSG00000028555
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ttc39aENSDARG00000074126Danio rerio
 TTC39AENSGALG00000010540Gallus gallus
 Q5SRH9ENSG00000085831Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BYY4 / Ttc39b / tetratricopeptide repeat domain 39B / Q5VTQ0*ENSMUSG0000003817252
Ttc39d / tetratricopeptide repeat domain 39DENSMUSG0000004619638
Ttc39c / tetratricopeptide repeat domain 39C / Q8N584*ENSMUSG0000002442423


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR019412  Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39
 IPR019734  Tetratricopeptide repeat
 IPR030416  Tetratricopeptide repeat protein 39A


Gene Ontology (GO)
protein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein bindingprotein binding
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr