ENSMUSG00000028898


Mus musculus

Features
Gene ID: ENSMUSG00000028898
  
Biological name :Trnau1ap
  
Synonyms : Q80VC6 / tRNA selenocysteine 1-associated protein 1 / Trnau1ap
  
Possible biological names infered from orthology : Q9NX07
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: D2.3
Gene start: 132311763
Gene end: 132329538
  
Corresponding Affymetrix probe sets: 10516884 (MoGene1.0st)   1428746_a_at (Mouse Genome 430 2.0 Array)   1428747_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030730
Ensembl peptide - ENSMUSP00000127767
Ensembl peptide - ENSMUSP00000127273
Ensembl peptide - ENSMUSP00000126492
Ensembl peptide - ENSMUSP00000120657
Ensembl peptide - ENSMUSP00000101582
Ensembl peptide - ENSMUSP00000101580
NCBI entrez gene - 71787     See in Manteia.
MGI - MGI:1919037
RefSeq - XM_017320388
RefSeq - NM_027925
RefSeq - XM_006539180
RefSeq - XM_011250332
RefSeq - XM_011250334
RefSeq Peptide - NP_082201
swissprot - E9Q3V7
swissprot - Q80VC6
swissprot - E9PYW1
swissprot - A2CEQ9
swissprot - A2CEQ8
swissprot - E9Q0Q0
swissprot - A2CEQ6
Ensembl - ENSMUSG00000028898
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q503H1ENSDARG00000101323Danio rerio
 ENSGALG00000001310Gallus gallus
 Q9NX07ENSG00000180098Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034510  SECp43, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001514 selenocysteine incorporation IDA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001405 impaired coordination "reduced ability to execute integrated movements of muscle" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Pax5tm3Mbu/Pax5+,Tcf3tm1(PBX1)Mlc/Tcf3+,Cd19tm1(cre)Cgn/Cd19+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Pax5tm3Mbu/Pax5+,Tcf3tm1(PBX1)Mlc/Tcf3+,Cd19tm1(cre)Cgn/Cd19+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0011091 complete prenatal lethality "death of all organisms of a given genotype in a population between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Pax5tm3Mbu/Pax5+,Tcf3tm1(PBX1)Mlc/Tcf3+,Cd19tm1(cre)Cgn/Cd19+
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr