ENSMUSG00000029397


Mus musculus

Features
Gene ID: ENSMUSG00000029397
  
Biological name :Rchy1
  
Synonyms : Q9CR50 / Rchy1 / ring finger and CHY zinc finger domain containing 1
  
Possible biological names infered from orthology : Q96PM5
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: E2
Gene start: 91948904
Gene end: 91963068
  
Corresponding Affymetrix probe sets: 10531290 (MoGene1.0st)   1432144_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000031345
Ensembl peptide - ENSMUSP00000131270
NCBI entrez gene - 68098     See in Manteia.
MGI - MGI:1915348
RefSeq - XM_006535191
RefSeq - NM_001271797
RefSeq - NM_026557
RefSeq Peptide - NP_001258726
RefSeq Peptide - NP_080833
swissprot - Q9CR50
swissprot - G3UWD8
Ensembl - ENSMUSG00000029397
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rchy1ENSDARG00000016710Danio rerio
 RCHY1ENSGALG00000023335Gallus gallus
 RCHY1ENSG00000163743Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR008913  Zinc finger, CHY-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017921  Zinc finger, CTCHY-type
 IPR037274  Zinc finger, CHY-type superfamily
 IPR037275  Zinc finger, CTCHY-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0016567 protein ubiquitination ISO
 biological_processGO:0031398 positive regulation of protein ubiquitination IEA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0051865 protein autoubiquitination ISO
 cellular_componentGO:0000151 ubiquitin ligase complex IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0002039 p53 binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0008270 zinc ion binding ISO
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Translesion Synthesis by POLH
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0008411 decreased cellular sensitivity to ultraviolet irradiation "reduced incidence of cell death following exposure to ultraviolet irradiation" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Apba3tm1.2Ski/Apba3tm1.2Ski
Genetic Background: B6.129-Apba3tm1.2Ski

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000023953 Polh / Q9JJN0 / DNA polymerase eta / Q9Y253*  / complex / reaction






 

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