ENSMUSG00000031370


Mus musculus
bindingZrsr2rnadomainurecognitionmotifzincfingerccch-typesuperfamilyspliceosomalcomplexmrnasplicingeukaryoteauxiliaryfactorsmallsubunitrna-bindingassemblyviaspliceosome-typeafnucleicacidpre-mrna-splicesite

Features
Gene ID: ENSMUSG00000031370
  
Biological name :Zrsr2
  
Synonyms : zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 / Zrsr2
  
Possible biological names infered from orthology : Q15696
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: F5
Gene start: 163935443
Gene end: 163958661
  
Corresponding Affymetrix probe sets: 10607724 (MoGene1.0st)   1421128_at (Mouse Genome 430 2.0 Array)   1442154_at (Mouse Genome 430 2.0 Array)   1455727_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000088350
Ensembl peptide - ENSMUSP00000122747
Ensembl peptide - ENSMUSP00000120257
Ensembl peptide - ENSMUSP00000107908
NCBI entrez gene - 22184     See in Manteia.
MGI - MGI:103287
RefSeq - XM_006528796
RefSeq - NM_009453
RefSeq - NM_178794
RefSeq - XM_006528795
RefSeq Peptide - NP_848909
RefSeq Peptide - NP_033479
swissprot - B1B0F1
swissprot - B1B0E9
swissprot - B1B0E8
swissprot - B1B0F0
Ensembl - ENSMUSG00000031370
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zrsr2ENSDARG00000058448Danio rerio
 ZRSR2ENSGALG00000016552Gallus gallus
 ZRSR2ENSG00000169249Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Zrsr1 / Q64707 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1ENSMUSG0000004406858
U2af1 / Q9D883 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 / P0DN76* / U2AF1L5* / U2 small nuclear RNA auxiliary factor 1 like 5*ENSMUSG0000006161316
Q8BGJ9 / U2af1l4 / U2 small nuclear RNA auxiliary factor 1-like 4 / Q8WU68* / AD000671.2*ENSMUSG0000007876514
Q8BGJ9 / U2af1l4 / Splicing factor U2AF 26 kDa subunit / Q8WU68* / AD000671.2* / U2 small nuclear RNA auxiliary factor 1 like 4*ENSMUSG0000010937814


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
nitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular component organizationcellular component biogenesiscellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabnitrogen compound metabolic processcellular component orgacellular component organizationcellular component biogcellular component biogenesiscellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingheterocyclic compound bindingion bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound bindingion bindingion binding
cellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellprotein-containing complexorganellecellcellprotein-containing complexprotein-containing complexorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0089701 U2AF IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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