ENSMUSG00000078765


Mus musculus

Features
Gene ID: ENSMUSG00000078765
  
Biological name :U2af1l4
  
Synonyms : Q8BGJ9 / U2af1l4 / U2 small nuclear RNA auxiliary factor 1-like 4
  
Possible biological names infered from orthology : AD000671.2 / Q8WU68
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: B1
Gene start: 30563301
Gene end: 30565365
  
Corresponding Affymetrix probe sets: 10551971 (MoGene1.0st)   10551981 (MoGene1.0st)   1434305_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000129102
Ensembl peptide - ENSMUSP00000146834
Ensembl peptide - ENSMUSP00000146831
Ensembl peptide - ENSMUSP00000146344
Ensembl peptide - ENSMUSP00000132915
Ensembl peptide - ENSMUSP00000132536
Ensembl peptide - ENSMUSP00000132316
Ensembl peptide - ENSMUSP00000131781
Ensembl peptide - ENSMUSP00000131654
Ensembl peptide - ENSMUSP00000131193
Ensembl peptide - ENSMUSP00000131048
Ensembl peptide - ENSMUSP00000130649
Ensembl peptide - ENSMUSP00000129697
Ensembl peptide - ENSMUSP00000129385
Ensembl peptide - ENSMUSP00000039406
Ensembl peptide - ENSMUSP00000125790
Ensembl peptide - ENSMUSP00000125838
Ensembl peptide - ENSMUSP00000125959
Ensembl peptide - ENSMUSP00000127233
Ensembl peptide - ENSMUSP00000128950
NCBI entrez gene - 233073     See in Manteia.
MGI - MGI:2678374
RefSeq - NM_170760
RefSeq Peptide - NP_739566
swissprot - E9Q5D0
swissprot - E9Q3S9
swissprot - E9Q1I7
swissprot - E9PWX6
swissprot - E9PWM2
swissprot - E9PWA1
swissprot - E9PUZ3
swissprot - A0A140LII6
swissprot - A0A140LII3
swissprot - A0A140LHB1
swissprot - F7A6Z4
swissprot - F7D8X7
swissprot - E9Q809
swissprot - Q8BGJ9
swissprot - E9Q5Y2
swissprot - E9Q5J3
Ensembl - ENSMUSG00000078765
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AD000671.2ENSG00000267120Homo sapiens
 Q8WU68ENSG00000161265Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BGJ9 / U2af1l4 / Splicing factor U2AF 26 kDa subunit / Q8WU68* / AD000671.2* / U2 small nuclear RNA auxiliary factor 1 like 4*ENSMUSG00000109378100
U2af1 / Q9D883 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 / P0DN76* / U2AF1L5* / U2 small nuclear RNA auxiliary factor 1 like 5*ENSMUSG0000006161381
Zrsr2 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 / Q15696*ENSMUSG0000003137034
Zrsr1 / Q64707 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1ENSMUSG0000004406830


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0089701 U2AF IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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