ENSMUSG00000031952


Mus musculus

Features
Gene ID: ENSMUSG00000031952
  
Biological name :Chst5
  
Synonyms : Carbohydrate sulfotransferase 5 / Chst5 / Q9QUP4
  
Possible biological names infered from orthology : carbohydrate sulfotransferase 6 / CHST6 / Q9GZS9 / Q9GZX3
  
Species: Mus musculus
  
Chr. number: 8
Strand: -1
Band: E1
Gene start: 111889136
Gene end: 111910447
  
Corresponding Affymetrix probe sets: 10581914 (MoGene1.0st)   1419320_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000034430
NCBI entrez gene - 56773     See in Manteia.
MGI - MGI:1931825
RefSeq - NM_019950
RefSeq Peptide - NP_064334
swissprot - Q9QUP4
Ensembl - ENSMUSG00000031952
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHST6ENSDARG00000061357Danio rerio
 CHST6ENSGALG00000000913Gallus gallus
 CHST5ENSG00000135702Homo sapiens
 CHST6ENSG00000183196Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Chst4 / carbohydrate sulfotransferase 4 / Q8NCG5*ENSMUSG0000003593051
Chst2 / Q80WV3 / Carbohydrate sulfotransferase 2 / Q9Y4C5*ENSMUSG0000003335035
Chst7 / Q9EP78 / Carbohydrate sulfotransferase 7 / Q9NS84*ENSMUSG0000003734735
Chst1 / Q9EQC0 / Carbohydrate sulfotransferase 1 / O43916*ENSMUSG0000002722132
Chst3 / O88199 / Carbohydrate sulfotransferase 3 / Q7LGC8*ENSMUSG0000005733732


Protein motifs (from Interpro)
Interpro ID Name
 IPR000863  Sulfotransferase domain
 IPR016469  Carbohydrate sulfotransferase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0006044 N-acetylglucosamine metabolic process IDA
 biological_processGO:0006790 sulfur compound metabolic process IDA
 biological_processGO:0018146 keratan sulfate biosynthetic process IDA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 molecular_functionGO:0001517 N-acetylglucosamine 6-O-sulfotransferase activity IDA
 molecular_functionGO:0008146 sulfotransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Keratan sulfate biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001312 abnormal cornea morphology "malformation or absence of the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure " [MeSH:National Library of Medicine - Medical Subject Headings , 2003, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Prrx1tm1Jfm/Prrx1tm1Jfm
Genetic Background: involves: 129S4/SvJaeSor

 MP:0003092 reduced corneal stroma thickness "reduced width of the lamellated connective tissue layer of the cornea" [ava:Anna V. Anagnostopoulos, Mouse Genome Informatics Curator, J:81616]
Show

Allelic Composition: Prrx1tm1Jfm/Prrx1tm1Jfm
Genetic Background: involves: 129S4/SvJaeSor

 MP:0005300 abnormal corneal stroma morphology "structural anomaly of the lamellated connective tissue of the cornea" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Prrx1tm1Jfm/Prrx1tm1Jfm
Genetic Background: involves: 129S4/SvJaeSor

 MP:0005543 corneal thinning "decreased thickness of the cornea, the transparent anterior portion of the fibrous coat of the eye that serves as the chief refractory structure " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Prrx1tm1Jfm/Prrx1tm1Jfm
Genetic Background: involves: 129S4/SvJaeSor

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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