ENSMUSG00000038406


Mus musculus

Features
Gene ID: ENSMUSG00000038406
  
Biological name :Scaf1
  
Synonyms : Q5U4C3 / Scaf1 / Splicing factor, arginine/serine-rich 19
  
Possible biological names infered from orthology : Q9H7N4 / SR-related CTD associated factor 1
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: B3
Gene start: 45002948
Gene end: 45016363
  
Corresponding Affymetrix probe sets: 10563037 (MoGene1.0st)   1434908_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000148251
Ensembl peptide - ENSMUSP00000082501
Ensembl peptide - ENSMUSP00000147712
NCBI entrez gene - 233208     See in Manteia.
MGI - MGI:2141980
RefSeq - NM_001008422
RefSeq - XM_006540821
RefSeq - XM_011250855
RefSeq Peptide - NP_001008422
swissprot - A0A1B0GRY2
swissprot - Q5U4C3
Ensembl - ENSMUSG00000038406
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf1ENSDARG00000054010Danio rerio
 SCAF1ENSG00000126461Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Phrf1 / A6H619 / PHD and RING finger domain-containing protein 1 / Q9P1Y6* / PHD and ring finger domains 1*ENSMUSG0000003861123
Scaf11 / SR-related CTD associated factor 11 / Q99590*ENSMUSG0000003322815


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr