ENSMUSG00000038520


Mus musculus

Features
Gene ID: ENSMUSG00000038520
  
Biological name :Tbc1d17
  
Synonyms : Q8BYH7 / Tbc1d17 / TBC1 domain family, member 17
  
Possible biological names infered from orthology : Q9HA65
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: B3
Gene start: 44834623
Gene end: 44849079
  
Corresponding Affymetrix probe sets: 10562911 (MoGene1.0st)   1423659_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121546
Ensembl peptide - ENSMUSP00000147046
Ensembl peptide - ENSMUSP00000146935
Ensembl peptide - ENSMUSP00000146691
Ensembl peptide - ENSMUSP00000146488
Ensembl peptide - ENSMUSP00000048260
NCBI entrez gene - 233204     See in Manteia.
MGI - MGI:2449973
RefSeq - NM_001042655
RefSeq Peptide - NP_001036120
swissprot - A0A140LHP1
swissprot - I6L974
swissprot - A0A140LJ22
swissprot - Q8BYH7
swissprot - A0A140LIS2
swissprot - A0A140LI65
Ensembl - ENSMUSG00000038520
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbc1d17ENSDARG00000005927Danio rerio
 Q9HA65ENSG00000104946Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CXF4 / Tbc1d15 / TBC1 domain family member 15 / Q8TC07*ENSMUSG0000002013049
Tbc1d16 / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA. / Q8TBP0* / TBC1 domain family member 16*ENSMUSG0000003997625
A1A5B6 / Tbc1d25 / TBC1 domain family member 25 / Q3MII6*ENSMUSG0000003920124
Sgsm2 / Q80U12 / Small G protein signaling modulator 2 / O43147*ENSMUSG0000003835122
Sgsm1 / Q8BPQ7 / Small G protein signaling modulator 1 / Q2NKQ1*ENSMUSG0000004221621


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR021935  Domain of unknown function DUF3548
 IPR035969  Rab-GTPase-TBC domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000003037 Rab8a / P55258 / RAB8A, member RAS oncogene family / P61006*  / complex / reaction
 ENSMUSG00000026672 Optn / Q8K3K8 / Mus musculus optineurin (Optn), transcript variant 1, mRNA. / Q96CV9* / optineurin*  / complex / reaction
 ENSMUSG00000036943 Rab8b / P61028 / RAB8B, member RAS oncogene family / Q92930*  / complex / reaction






 

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