ENSDARG00000005927


Danio rerio

Features
Gene ID: ENSDARG00000005927
  
Biological name :tbc1d17
  
Synonyms : tbc1d17 / TBC1 domain family, member 17
  
Possible biological names infered from orthology : Q8BYH7 / Q9HA65
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 30166946
Gene end: 30186298
  
Corresponding Affymetrix probe sets: Dr.7418.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000123338
Ensembl peptide - ENSDARP00000020784
Ensembl peptide - ENSDARP00000071525
NCBI entrez gene - 554092     See in Manteia.
RefSeq - NM_001024394
RefSeq - XM_005163947
RefSeq Peptide - NP_001019565
swissprot - F1QM41
swissprot - F1Q5A4
swissprot - F1QXN6
ZFIN ID - ZDB-GENE-050522-79
Ensembl - ENSDARG00000005927
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9HA65ENSG00000104946Homo sapiens
 Q8BYH7ENSMUSG00000038520Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d15 / TBC1 domain family, member 15 / Q8TC07* / Q9CXF4*ENSDARG0000005721846
tbc1d16 / TBC1 domain family, member 16 / Q8TBP0* / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA.*ENSDARG0000003699424
sgsm2 / small G protein signaling modulator 2 / O43147* / Q80U12*ENSDARG0000006330722
sgsm1a / small G protein signaling modulator 1a / SGSM1* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000002885721
tbc1d25 / TBC1 domain family, member 25 / A1A5B6* / Q3MII6*ENSDARG0000007533321
sgsm1b / small G protein signaling modulator 1b / SGSM1* / Q8BPQ7* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000007537621
si:dkey-238d18.4ENSDARG0000008897214


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR021935  Domain of unknown function DUF3548


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000068628 rab8b / RAB8B, member RAS oncogene family / P61028* / Q92930*  / complex / reaction
 ENSDARG00000067920 rab8a / RAB8A, member RAS oncogene family / P55258* / P61006*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr