ENSDARG00000075333


Danio rerio

Features
Gene ID: ENSDARG00000075333
  
Biological name :tbc1d25
  
Synonyms : tbc1d25 / TBC1 domain family, member 25
  
Possible biological names infered from orthology : A1A5B6 / Q3MII6
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 23658626
Gene end: 23670494
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000078040
NCBI entrez gene - 556338     See in Manteia.
RefSeq - NM_001128236
RefSeq Peptide - NP_001121708
swissprot - B0S696
ZFIN ID - ZDB-GENE-041111-25
Ensembl - ENSDARG00000075333
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q3MII6ENSG00000068354Homo sapiens
 A1A5B6ENSMUSG00000039201Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d17 / TBC1 domain family, member 17 / Q8BYH7* / Q9HA65*ENSDARG0000000592716
tbc1d15 / TBC1 domain family, member 15 / Q8TC07* / Q9CXF4*ENSDARG0000005721816
sgsm1a / small G protein signaling modulator 1a / SGSM1* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000002885715
tbc1d16 / TBC1 domain family, member 16 / Q8TBP0* / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA.*ENSDARG0000003699414
sgsm2 / small G protein signaling modulator 2 / O43147* / Q80U12*ENSDARG0000006330714
sgsm1b / small G protein signaling modulator 1b / SGSM1* / Q8BPQ7* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000007537614
si:dkey-238d18.4ENSDARG0000008897213


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005776 autophagosome IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000027200 gabarapl2 / GABA(A) receptor-associated protein like 2 / P60520* / P60521* / GABA type A receptor associated protein like 2* / Gamma-aminobutyric acid receptor-associated protein-like 2 *  / complex / reaction
 ENSDARG00000035557 gabarapa / GABA(A) receptor-associated protein a / Q9DCD6* / O95166* / GABARAP* / GABA type A receptor-associated protein* / Gamma-aminobutyric acid receptor-associated protein *  / complex / reaction
 ENSDARG00000101127 map1lc3b / microtubule-associated protein 1 light chain 3 beta / Q9GZQ8* / Q9CQV6* / A6NCE7* / MAP1LC3B2* / Microtubule-associated proteins 1A/1B light chain 3B * / microtubule associated p...  / complex / reaction






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr