ENSDARG00000088972


Danio rerio

Features
Gene ID: ENSDARG00000088972
  
Biological name :si:dkey-238d18.4
  
Synonyms : si:dkey-238d18.4
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 37854483
Gene end: 37875601
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000110256
Ensembl peptide - ENSDARP00000155598
NCBI entrez gene - 796120     See in Manteia.
RefSeq - XM_003200074
swissprot - E7FBH3
ZFIN ID - ZDB-GENE-131121-307
Ensembl - ENSDARG00000088972
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d25 / TBC1 domain family, member 25 / A1A5B6* / Q3MII6*ENSDARG0000007533324
tbc1d16 / TBC1 domain family, member 16 / Q8TBP0* / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA.*ENSDARG0000003699421
tbc1d15 / TBC1 domain family, member 15 / Q8TC07* / Q9CXF4*ENSDARG0000005721821
tbc1d17 / TBC1 domain family, member 17 / Q8BYH7* / Q9HA65*ENSDARG0000000592719
sgsm1a / small G protein signaling modulator 1a / SGSM1* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000002885718
sgsm2 / small G protein signaling modulator 2 / O43147* / Q80U12*ENSDARG0000006330718
sgsm1b / small G protein signaling modulator 1b / SGSM1* / Q8BPQ7* / Q2NKQ1* / small G protein signaling modulator 1*ENSDARG0000007537616


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr