ENSMUSG00000040140


Mus musculus

Features
Gene ID: ENSMUSG00000040140
  
Biological name :Tdrd6
  
Synonyms : Tdrd6 / tudor domain-containing protein 6 isoform 3
  
Possible biological names infered from orthology : O60522 / tudor domain containing 6
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: B3
Gene start: 43615335
Gene end: 43630299
  
Corresponding Affymetrix probe sets: 10451033 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000035338
Ensembl peptide - ENSMUSP00000131277
NCBI entrez gene - 210510     See in Manteia.
MGI - MGI:2679727
RefSeq - XM_011246343
RefSeq - NM_001161367
RefSeq - NM_198418
RefSeq - XM_006523967
RefSeq - XM_006523968
RefSeq - XM_006523969
RefSeq - NM_001161366
RefSeq Peptide - NP_001154839
RefSeq Peptide - NP_940810
RefSeq Peptide - NP_001154838
swissprot - F2Z429
swissprot - E9PZ50
Ensembl - ENSMUSG00000040140
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-189e2.3ENSDARG00000089954Danio rerio
 tdrd6ENSDARG00000070052Danio rerio
 ENSGALG00000044279Gallus gallus
 TDRD6ENSG00000180113Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rnf17 / Q99MV7 / RING finger protein 17 / Q9BXT8*ENSMUSG0000000036512
Tdrd1 / Q99MV1 / Tudor domain-containing protein 1 / Q9BXT4* / tudor domain containing 1*ENSMUSG0000002508110
Tdrd5 / Q5VCS6 / Tudor domain-containing protein 5 / Q8NAT2* / tudor domain containing 5*ENSMUSG000000609856
Tdrkh / Q80VL1 / Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA. / Q9Y2W6* / tudor and KH domain containing*ENSMUSG000000419124


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000358 abnormal cell content/ morphology "structural anomalies of the minute protoplasmic masses that make up organized tissues and which are the fundamental structural and functional units of living organisms" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Hoxb8tm2Jdes/Hoxb8tm2Jdes
Genetic Background: involves: 129P2/OlaHsd * FVB

 MP:0001147 small testis "reduced size of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:58959]
Show

Allelic Composition: Hoxb8tm2Jdes/Hoxb8tm2Jdes
Genetic Background: involves: 129P2/OlaHsd * FVB

 MP:0001155 arrest of spermatogenesis "block of the process by which spermatogonial stem cells divide and differentiate into spermatozoa" [J:62271]
Show

Allelic Composition: Hoxb8tm2Jdes/Hoxb8tm2Jdes
Genetic Background: involves: 129P2/OlaHsd * FVB

Allelic Composition: Tdrd6tm1Chum/Tdrd6tm1Chum
Genetic Background: involves: 129S4/SvJae * C57BL/6

Allelic Composition: Tdrd6tm1Chum/Tdrd6tm1Chum,Tdrd7tm1.1Chum/Tdrd7tm1.1Chum
Genetic Background: involves: 129S4/SvJae * 129S6/SvEvTac * C57BL/6

 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Hoxb8tm2Jdes/Hoxb8tm2Jdes
Genetic Background: involves: 129P2/OlaHsd * FVB

Allelic Composition: Tdrd6tm1Chum/Tdrd6tm1Chum
Genetic Background: involves: 129S4/SvJae * C57BL/6

Allelic Composition: Tdrd6tm1Chum/Tdrd6tm1Chum,Tdrd7tm1.1Chum/Tdrd7tm1.1Chum
Genetic Background: involves: 129S4/SvJae * 129S6/SvEvTac * C57BL/6

 MP:0005159 azoospermia "absence of living spermatozoa " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Hoxb8tm2Jdes/Hoxb8tm2Jdes
Genetic Background: involves: 129P2/OlaHsd * FVB

 MP:0008280 male germ cell apoptosis "presence of male germs cells that undergo programmed cell death" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Hoxb8tm2Jdes/Hoxb8tm2Jdes
Genetic Background: involves: 129P2/OlaHsd * FVB

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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