ENSMUSG00000042079


Mus musculus

Features
Gene ID: ENSMUSG00000042079
  
Biological name :Hnrnpf
  
Synonyms : Heteroous nuclear ribonucleoprotein F Heteroous nuclear ribonucleoprotein F, N-terminally processed / Hnrnpf / Q9Z2X1
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein F / P52597
  
Species: Mus musculus
  
Chr. number: 6
Strand: 1
Band: F1
Gene start: 117900324
Gene end: 117925622
  
Corresponding Affymetrix probe sets: 10348929 (MoGene1.0st)   10407811 (MoGene1.0st)   10541104 (MoGene1.0st)   10604501 (MoGene1.0st)   1423382_a_at (Mouse Genome 430 2.0 Array)   1437099_x_at (Mouse Genome 430 2.0 Array)   1450963_at (Mouse Genome 430 2.0 Array)   1456664_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000137632
Ensembl peptide - ENSMUSP00000045048
Ensembl peptide - ENSMUSP00000126817
Ensembl peptide - ENSMUSP00000130023
Ensembl peptide - ENSMUSP00000136162
Ensembl peptide - ENSMUSP00000136436
Ensembl peptide - ENSMUSP00000136477
Ensembl peptide - ENSMUSP00000136700
Ensembl peptide - ENSMUSP00000136751
Ensembl peptide - ENSMUSP00000137091
NCBI entrez gene - 98758     See in Manteia.
MGI - MGI:2138741
RefSeq - XM_006506829
RefSeq - NM_001166427
RefSeq - NM_001166428
RefSeq - NM_001166429
RefSeq - NM_001166430
RefSeq - NM_001166431
RefSeq - NM_001166432
RefSeq - NM_133834
RefSeq Peptide - NP_001159904
RefSeq Peptide - NP_598595
RefSeq Peptide - NP_001159899
RefSeq Peptide - NP_001159900
RefSeq Peptide - NP_001159901
RefSeq Peptide - NP_001159902
RefSeq Peptide - NP_001159903
swissprot - J3QNH2
swissprot - Q9Z2X1
swissprot - J3QMT0
swissprot - J3QP45
swissprot - J3QM80
swissprot - J3QMV8
Ensembl - ENSMUSG00000042079
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnph1ENSDARG00000040881Danio rerio
 hnrnph1lENSDARG00000005551Danio rerio
 HNRNPH2ENSGALG00000031120Gallus gallus
 HNRNPFENSG00000169813Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O35737 / Hnrnph1 / Mus musculus heteroous nuclear ribonucleoprotein H1 (Hnrnph1), transcript variant 1, mRNA. / P31943* / heterogeneous nuclear ribonucleoprotein H1*ENSMUSG0000000785077
P70333 / Hnrnph2 / Heteroous nuclear ribonucleoprotein H2 Heteroous nuclear ribonucleoprotein H2, N-terminally processed / P55795* / heterogeneous nuclear ribonucleoprotein H2*ENSMUSG0000004542776
Hnrnph3 / Mus musculus heteroous nuclear ribonucleoprotein H3 (Hnrnph3), transcript variant 3, mRNA. / P31942* / heterogeneous nuclear ribonucleoprotein H3*ENSMUSG0000002006946
Grsf1 / Q8C5Q4 / G-rich sequence factor 1 / Q12849* / G-rich RNA sequence binding factor 1*ENSMUSG0000004422136
Esrp1 / Q3US41 / Mus musculus epithelial splicing regulatory protein 1 (Esrp1), transcript variant 3, mRNA. / Q6NXG1* / epithelial splicing regulatory protein 1*ENSMUSG0000004072829
Esrp2 / Q8K0G8 / Epithelial splicing regulatory protein 2 / Q9H6T0*ENSMUSG0000008412827
Q80YR9 / Rbm12b1 / RNA-binding protein 12B-A / RBM12B* / Q8IXT5* / RNA binding motif protein 12B*ENSMUSG0000004666722
Q66JV4 / Rbm12b2 / Mus musculus RNA binding motif protein 12 B2 (Rbm12b2), transcript variant 3, mRNA. / Q8IXT5* / RBM12B* / RNA binding motif protein 12B*ENSMUSG0000005213722
Rbm12 / Q8R4X3 / RNA-binding protein 12 / Q9NTZ6* / RNA binding motif protein 12*ENSMUSG0000008982422
Gm28036ENSMUSG000000989505


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012996  Zinc finger, CHHC-type
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0043484 regulation of RNA splicing ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0071013 catalytic step 2 spliceosome ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding ISS
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0017025 TBP-class protein binding IEA


Pathways (from Reactome)
Pathway description
FGFR2 alternative splicing
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000007850 O35737 / Hnrnph1 / Mus musculus heteroous nuclear ribonucleoprotein H1 (Hnrnph1), transcript variant 1, mRNA. / P31943* / heterogeneous nuclear ribonucleoprotein H1*  / complex
 ENSMUSG00000033565 Q8BP71 / Rbfox2 / Mus musculus RNA binding protein, fox-1 homolog (C. elegans) 2 (Rbfox2), transcript variant 10, mRNA. / O43251* / RNA binding fox-1 homolog 2*  / complex






 

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