ENSMUSG00000049516


Mus musculus

Features
Gene ID: ENSMUSG00000049516
  
Biological name :Spty2d1
  
Synonyms : Q68FG3 / SPT2 chromatin protein domain containing 1 / Spty2d1
  
Possible biological names infered from orthology : Q68D10
  
Species: Mus musculus
  
Chr. number: 7
Strand: -1
Band: B3
Gene start: 46990396
Gene end: 47008411
  
Corresponding Affymetrix probe sets: 10563659 (MoGene1.0st)   1434885_at (Mouse Genome 430 2.0 Array)   1438145_at (Mouse Genome 430 2.0 Array)   1438146_x_at (Mouse Genome 430 2.0 Array)   1440109_at (Mouse Genome 430 2.0 Array)   1455130_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000059457
NCBI entrez gene - 101685     See in Manteia.
MGI - MGI:2142062
RefSeq - NM_175318
RefSeq Peptide - NP_780527
swissprot - Q68FG3
Ensembl - ENSMUSG00000049516
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 spty2d1ENSDARG00000033889Danio rerio
 E1BUG7ENSGALG00000006355Gallus gallus
 Q68D10ENSG00000179119Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013256  Chromatin SPT2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated ISO
 biological_processGO:0010847 regulation of chromatin assembly IEA
 biological_processGO:0043486 histone exchange IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus ISS
 molecular_functionGO:0001042 RNA polymerase I core binding ISS
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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