ENSMUSG00000054672


Mus musculus

Features
Gene ID: ENSMUSG00000054672
  
Biological name :5830411N06Rik
  
Synonyms : 5830411N06Rik / RIKEN cDNA 5830411N06 gene
  
Possible biological names infered from orthology : Q4G0T1 / SCART1 / scavenger receptor family member expressed on T cells 1
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: F4
Gene start: 140247284
Gene end: 140300736
  
Corresponding Affymetrix probe sets: 10558631 (MoGene1.0st)   1438536_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000131905
Ensembl peptide - ENSMUSP00000091520
NCBI entrez gene - 244234     See in Manteia.
MGI - MGI:2443685
RefSeq - XM_006536189
RefSeq - NM_001128145
RefSeq - NM_001128146
RefSeq - XM_006536186
RefSeq Peptide - NP_001121617
RefSeq Peptide - NP_001121618
swissprot - B3F5L5
swissprot - B3F5L4
Ensembl - ENSMUSG00000054672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX784029.3ENSDARG00000096156Danio rerio
 BX784029.4ENSDARG00000096184Danio rerio
 si:ch211-161n3.3ENSDARG00000092989Danio rerio
 si:ch211-161n3.4ENSDARG00000045752Danio rerio
 si:ch211-161n3.5ENSDARG00000095981Danio rerio
 si:dkey-21h14.10ENSDARG00000096187Danio rerio
 si:dkey-21h14.12ENSDARG00000094603Danio rerio
 si:dkey-21h14.8ENSDARG00000096083Danio rerio
 si:dkey-21h14.9ENSDARG00000096153Danio rerio
 ENSGALG00000046256Gallus gallus
 Q4G0T1ENSG00000214279Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cd163l1 / CD163 molecule-like 1 / Q4G0T1* / SCART1* / scavenger receptor family member expressed on T cells 1*ENSMUSG0000002546155
Cd163 / Q2VLH6 / Scavenger receptor cysteine-rich type 1 protein M130 Soluble CD163 / Q86VB7* / CD163 molecule*ENSMUSG0000000884534
Dmbt1 / Mus musculus deleted in malignant brain tumors 1 (Dmbt1), transcript variant 1, mRNA. / Q9UGM3* / deleted in malignant brain tumors 1*ENSMUSG0000004751730
Ssc5d / Q8BV57 / Soluble scavenger receptor cysteine-rich domain-containing protein SSC5D / A1L4H1* / scavenger receptor cysteine rich family member with 5 domains*ENSMUSG0000003527920
Ssc4d / A1L0T3 / scavenger receptor cysteine rich family, 4 domains / Q8WTU2* / scavenger receptor cysteine rich family member with 4 domains*ENSMUSG0000002969918
O08762 / Prss12 / protease, serine 12 neurotrypsin (motopsin) / P56730* / serine protease 12*ENSMUSG0000002797815
Q8BZE1 / 5430419D17Rik / Putative DMBT1-like protein ENSMUSG0000000620414
Cd5l / Q9QWK4 / CD5 antigen-like / O43866* / CD5 molecule like*ENSMUSG0000001585412


Protein motifs (from Interpro)
Interpro ID Name
 IPR001190  SRCR domain
 IPR017448  SRCR-like domain
 IPR036772  SRCR-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002365 gamma-delta T cell lineage commitment IDA
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0032620 interleukin-17 production IDA
 cellular_componentGO:0009897 external side of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005044 scavenger receptor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002631 abnormal epididymis morphology "malformation of the elongated structure connected to the posterior surface of the testis that transports, stores, and matures spermatozoa between testis and vas deferens" [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
Show

Allelic Composition: 4932438A13Riktm1b(EUCOMM)Hmgu/4932438A13Riktm1b(EUCOMM)Hmgu
Genetic Background: B6N(Cg)-4932438A13Riktm1b(EUCOMM)Hmgu/J

 MP:0004931 enlarged epididymis "increase in the average size of the elongated structure connected to the posterior surface of the testis that transports, stores, and matures spermatozoa between testis and vas deferens" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: 4932438A13Riktm1b(EUCOMM)Hmgu/4932438A13Riktm1b(EUCOMM)Hmgu
Genetic Background: B6N(Cg)-4932438A13Riktm1b(EUCOMM)Hmgu/J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr