ENSMUSG00000089837


Mus musculus

Features
Gene ID: ENSMUSG00000089837
  
Biological name :Npcd
  
Synonyms : Npcd
  
Possible biological names infered from orthology : neuronal pentraxin receptor / NPTXR / O95502
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: E1
Gene start: 79789675
Gene end: 79834237
  
Corresponding Affymetrix probe sets: 1421181_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000023060
Ensembl peptide - ENSMUSP00000086714
NCBI entrez gene - 504193     See in Manteia.
MGI - MGI:3845555
RefSeq - NM_001013360
RefSeq - NM_001013362
RefSeq Peptide - NP_001013378
RefSeq Peptide - NP_001013380
swissprot - H3BLN6
swissprot - F8VQB8
Ensembl - ENSMUSG00000089837
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NPTXRENSGALG00000041604Gallus gallus
 NPTXRENSG00000221890Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Nptxr / neuronal pentraxin receptor / O95502*ENSMUSG0000002242166
Nptx2 / O70340 / Neuronal pentraxin-2 / P47972*ENSMUSG0000005999137
Nptx1 / Q62443 / neuronal pentraxin 1 / Q15818*ENSMUSG0000002558233
Ptx4 / pentraxin-4 isoform 2 / Q96A99* / pentraxin 4*ENSMUSG0000004417219
Ptx3 / P48759 / Pentraxin-related protein PTX3 / P26022* / pentraxin 3*ENSMUSG0000002783214
Mptx1ENSMUSG0000002653111
Apcs / P12246 / serum amyloid P-component / P02743* / amyloid P component, serum*ENSMUSG0000002654211
Crp / P14847 / C-reactive protein / P02741*ENSMUSG0000003794211
Mptx2 / mucosal pentraxin 2ENSMUSG0000007918011


Protein motifs (from Interpro)
Interpro ID Name
 IPR000953  Chromo/chromo shadow domain
 IPR001759  Pentraxin-related
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016197  Chromo-like domain superfamily
 IPR017984  Chromo domain subgroup
 IPR023779  Chromo domain, conserved site
 IPR023780  Chromo domain
 IPR030476  Pentaxin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0009898 cytoplasmic side of plasma membrane IDA
 cellular_componentGO:0030175 filopodium IDA
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0030426 growth cone IDA
 cellular_componentGO:0043025 neuronal cell body IDA
 molecular_functionGO:0019904 protein domain specific binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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