ENSDARG00000000489


Danio rerio

Features
Gene ID: ENSDARG00000000489
  
Biological name :upf3b
  
Synonyms : upf3b / UPF3B, regulator of nonsense mediated mRNA decay
  
Possible biological names infered from orthology : Q9BZI7 / UPF3 regulator of nonsense transcripts homolog B (yeast)
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 33339322
Gene end: 33351103
  
Corresponding Affymetrix probe sets: Dr.13796.1.S1_at (Zebrafish Array)   Dr.13796.2.S1_at (Zebrafish Array)   Dr.13796.2.S1_x_at (Zebrafish Array)   Dr.26498.1.A1_at (Zebrafish Array)   NM_200954_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000011948
NCBI entrez gene - 393929     See in Manteia.
RefSeq - NM_200954
RefSeq Peptide - NP_957248
swissprot - F1QNX7
ZFIN ID - ZDB-GENE-040426-1630
Ensembl - ENSDARG00000000489
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UPF3BENSGALG00000008618Gallus gallus
 UPF3BENSG00000125351Homo sapiens
 Upf3bENSMUSG00000036572Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
upf3a / B0S733 / UPF3A, regulator of nonsense mediated mRNA decay / Q9H1J1* / UPF3 regulator of nonsense transcripts homolog A (yeast)*ENSDARG0000006929745


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR005120  UPF3 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr