ENSGALG00000008618


Gallus gallus

Features
Gene ID: ENSGALG00000008618
  
Biological name :UPF3B
  
Synonyms : UPF3B / UPF3B, regulator of nonsense mediated mRNA decay
  
Possible biological names infered from orthology : Q9BZI7 / UPF3 regulator of nonsense transcripts homolog B (yeast)
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 16559396
Gene end: 16566077
  
Corresponding Affymetrix probe sets: GgaAffx.13137.1.S1_at (Chicken Array)   GgaAffx.5426.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000038283
swissprot - F1NQA5
Ensembl - ENSGALG00000008618
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 upf3bENSDARG00000000489Danio rerio
 UPF3BENSG00000125351Homo sapiens
 Upf3bENSMUSG00000036572Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
UPF3A / UPF3A, regulator of nonsense mediated mRNA decay / Q9H1J1* / UPF3 regulator of nonsense transcripts homolog A (yeast)*ENSGALG0000001681545


Protein motifs (from Interpro)
Interpro ID Name
 IPR005120  UPF3 domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0045727 positive regulation of translation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0035145 exon-exon junction complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003729 mRNA binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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