ENSGALG00000016815


Gallus gallus

Features
Gene ID: ENSGALG00000016815
  
Biological name :UPF3A
  
Synonyms : UPF3A / UPF3A, regulator of nonsense mediated mRNA decay
  
Possible biological names infered from orthology : Q9H1J1 / UPF3 regulator of nonsense transcripts homolog A (yeast)
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 136915096
Gene end: 136936956
  
Corresponding Affymetrix probe sets: GgaAffx.10764.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027096
NCBI entrez gene - 418734     See in Manteia.
RefSeq - XM_416933
swissprot - E1BV08
Ensembl - ENSGALG00000016815
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 upf3aENSDARG00000069297Danio rerio
 UPF3AENSG00000169062Homo sapiens
 Upf3aENSMUSG00000038398Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
UPF3B / UPF3B, regulator of nonsense mediated mRNA decay / Q9BZI7* / UPF3 regulator of nonsense transcripts homolog B (yeast)*ENSGALG0000000861839


Protein motifs (from Interpro)
Interpro ID Name
 IPR005120  UPF3 domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0045727 positive regulation of translation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0035145 exon-exon junction complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000009288 RNPS1 / RNA binding protein with serine rich domain 1 / Q15287* / Q99M28*  / complex
 ENSGALG00000010689 MAGOH / P50594 / Protein mago nashi homolog / Q96A72* / MAGOHB* / mago homolog B, exon junction complex core component*  / complex
 ENSGALG00000008530 Q5ZM36 / EIF4A3 / Eukaryotic initiation factor 4A-III / Q91VC3* / Gm5580* / Gm8994* / P38919* / eukaryotic translation initiation factor 4A3* / Eukaryotic initiation factor 4A-III Eukaryot...  / complex
 ENSGALG00000031813 CASC3 / cancer susceptibility 3 / O15234* / Q8K3W3* / Protein CASC3 *  / complex
 ENSGALG00000033772 UPF2 / UPF2, regulator of nonsense mediated mRNA decay / Q9HAU5* / UPF2 regulator of nonsense transcripts homolog (yeast)*  / complex






 

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