ENSGALG00000033772


Gallus gallus

Features
Gene ID: ENSGALG00000033772
  
Biological name :UPF2
  
Synonyms : UPF2 / UPF2, regulator of nonsense mediated mRNA decay
  
Possible biological names infered from orthology : Q9HAU5 / UPF2 regulator of nonsense transcripts homolog (yeast)
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 6218145
Gene end: 6266504
  
Corresponding Affymetrix probe sets: Gga.12989.1.S1_at (Chicken Array)   Gga.17396.1.S1_at (Chicken Array)   GgaAffx.4167.1.S1_at (Chicken Array)   GgaAffx.4170.1.S1_at (Chicken Array)   GgaAffx.42.1.S1_s_at (Chicken Array)   GgaAffx.42.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046655
Ensembl peptide - ENSGALP00000052359
NCBI entrez gene - 419100     See in Manteia.
RefSeq - XM_015297566
RefSeq - XM_015297600
RefSeq - XM_015297667
swissprot - A0A1D5PHS9
swissprot - A0A1D5P1W3
Ensembl - ENSGALG00000033772
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01068469.1ENSDARG00000111388Danio rerio
 UPF2ENSG00000151461Homo sapiens
 Upf2ENSMUSG00000043241Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003890  MIF4G-like, type 3
 IPR007193  Up-frameshift suppressor 2
 IPR016021  MIF4G-like domain superfamily
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0031100 animal organ regeneration IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0035145 exon-exon junction complex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000010689 MAGOH / P50594 / Protein mago nashi homolog / Q96A72* / MAGOHB* / mago homolog B, exon junction complex core component*  / complex
 ENSGALG00000008530 Q5ZM36 / EIF4A3 / Eukaryotic initiation factor 4A-III / Q91VC3* / Gm5580* / Gm8994* / P38919* / eukaryotic translation initiation factor 4A3* / Eukaryotic initiation factor 4A-III Eukaryot...  / complex
 ENSGALG00000031813 CASC3 / cancer susceptibility 3 / O15234* / Q8K3W3* / Protein CASC3 *  / complex
 ENSGALG00000009288 RNPS1 / RNA binding protein with serine rich domain 1 / Q15287* / Q99M28*  / complex
 ENSGALG00000016815 UPF3A / UPF3A, regulator of nonsense mediated mRNA decay / Q9H1J1* / UPF3 regulator of nonsense transcripts homolog A (yeast)*  / complex






 

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