ENSDARG00000000747


Danio rerio

Features
Gene ID: ENSDARG00000000747
  
Biological name :lcmt2
  
Synonyms : lcmt2 / leucine carboxyl methyltransferase 2
  
Possible biological names infered from orthology : O60294 / Q8BYR1 / tRNA wybutosine-synthesizing protein 4
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 27720267
Gene end: 27734078
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000099119
Ensembl peptide - ENSDARP00000121238
NCBI entrez gene - 100005300     See in Manteia.
swissprot - A8WHX0
swissprot - E9QC79
ZFIN ID - ZDB-GENE-110714-2
Ensembl - ENSDARG00000000747
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LCMT2ENSGALG00000017333Gallus gallus
 LCMT2ENSG00000168806Homo sapiens
 Lcmt2ENSMUSG00000074890Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lcmt1 / leucine carboxyl methyltransferase 1 / Q9UIC8*ENSDARG0000004514016


Protein motifs (from Interpro)
Interpro ID Name
 IPR007213  Methyltransferase Ppm1/Ppm2/Tcmp
 IPR011043  Galactose oxidase/kelch, beta-propeller
 IPR015915  Kelch-type beta propeller
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0031591 wybutosine biosynthetic process IBA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008175 tRNA methyltransferase activity IBA
 molecular_functionGO:0008757 S-adenosylmethionine-dependent methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr