ENSGALG00000017333


Gallus gallus

Features
Gene ID: ENSGALG00000017333
  
Biological name :LCMT2
  
Synonyms : LCMT2 / leucine carboxyl methyltransferase 2
  
Possible biological names infered from orthology : O60294 / Q8BYR1 / tRNA wybutosine-synthesizing protein 4
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 194262382
Gene end: 194288323
  
Corresponding Affymetrix probe sets: Gga.3188.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027959
Ensembl peptide - ENSGALP00000053145
Ensembl peptide - ENSGALP00000044013
NCBI entrez gene - 419072     See in Manteia.
RefSeq - XM_015280920
RefSeq - XM_015280921
RefSeq - XM_015280922
swissprot - E1C573
swissprot - A0A1D5PJZ6
swissprot - A0A1D5NUJ5
Ensembl - ENSGALG00000017333
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lcmt2ENSDARG00000000747Danio rerio
 LCMT2ENSG00000168806Homo sapiens
 Lcmt2ENSMUSG00000074890Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LCMT1 / leucine carboxyl methyltransferase 1 / Q9UIC8*ENSGALG0000000597314


Protein motifs (from Interpro)
Interpro ID Name
 IPR007213  Methyltransferase Ppm1/Ppm2/Tcmp
 IPR011043  Galactose oxidase/kelch, beta-propeller
 IPR015915  Kelch-type beta propeller
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0031591 wybutosine biosynthetic process IBA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008175 tRNA methyltransferase activity IBA
 molecular_functionGO:0008757 S-adenosylmethionine-dependent methyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr