ENSDARG00000002190


Danio rerio

Features
Gene ID: ENSDARG00000002190
  
Biological name :chmp2bb
  
Synonyms : charged multivesicular body protein 2Bb / chmp2bb / Q6NXD2
  
Possible biological names infered from orthology : charged multivesicular body protein 2B / CHMP2B / Q8BJF9 / Q9UQN3
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 33558555
Gene end: 33569245
  
Corresponding Affymetrix probe sets: Dr.10196.1.S1_at (Zebrafish Array)   Dr.10196.2.S1_a_at (Zebrafish Array)   Dr.25480.1.A1_at (Zebrafish Array)   NM_212904_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000008354
NCBI entrez gene - 405840     See in Manteia.
RefSeq - NM_212904
RefSeq Peptide - NP_998069
swissprot - Q6NXD2
ZFIN ID - ZDB-GENE-040426-2539
Ensembl - ENSDARG00000002190
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHMP2BENSGALG00000015496Gallus gallus
 CHMP2BENSG00000083937Homo sapiens
 Chmp2bENSMUSG00000004843Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chmp2ba / charged multivesicular body protein 2Ba / CHMP2B* / Q8BJF9* / Q9UQN3* / charged multivesicular body protein 2B*ENSDARG0000006868379
chmp2a / charged multivesicular body protein 2A / O43633* / Q9DB34*ENSDARG0000005397934


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA


Pathways (from Reactome)
Pathway description
Macroautophagy
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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