ENSDARG00000003968


Danio rerio

Features
Gene ID: ENSDARG00000003968
  
Biological name :larp6b
  
Synonyms : La ribonucleoprotein domain family, member 6b / larp6b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 6446235
Gene end: 6452492
  
Corresponding Affymetrix probe sets: Dr.841.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000019822
Ensembl peptide - ENSDARP00000121384
Ensembl peptide - ENSDARP00000118476
NCBI entrez gene - 565767     See in Manteia.
RefSeq - NM_001089408
RefSeq Peptide - NP_001082877
swissprot - A8B8W9
swissprot - A8B8W4
swissprot - A8B8W0
ZFIN ID - ZDB-GENE-041008-244
Ensembl - ENSDARG00000003968
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LARP6LENSGALG00000044970Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
larp6a / La ribonucleoprotein domain family, member 6a / LARP6* / Q8BN59* / Q9BRS8* / La-related protein 6 * / La ribonucleoprotein domain family member 6*ENSDARG0000000535534
larp7 / La ribonucleoprotein domain family, member 7 / Q4G0J3*ENSDARG0000001731515


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr