ENSDARG00000005355


Danio rerio

Features
Gene ID: ENSDARG00000005355
  
Biological name :larp6a
  
Synonyms : La ribonucleoprotein domain family, member 6a / larp6a
  
Possible biological names infered from orthology : La-related protein 6 / La ribonucleoprotein domain family member 6 / LARP6 / Q8BN59 / Q9BRS8
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 173603
Gene end: 194844
  
Corresponding Affymetrix probe sets: Dr.6975.1.A1_at (Zebrafish Array)   NM_199903_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114792
Ensembl peptide - ENSDARP00000153929
NCBI entrez gene - 334471     See in Manteia.
RefSeq - NM_199903
RefSeq Peptide - NP_956197
swissprot - F1QDH4
swissprot - Q6PHD4
ZFIN ID - ZDB-GENE-030131-6403
Ensembl - ENSDARG00000005355
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LARP6ENSGALG00000004046Gallus gallus
 LARP6ENSG00000166173Homo sapiens
 Larp6ENSMUSG00000034839Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
larp6b / La ribonucleoprotein domain family, member 6bENSDARG0000000396833
larp7 / La ribonucleoprotein domain family, member 7 / Q4G0J3*ENSDARG0000001731515


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR024642  SUZ-C domain
 IPR034880  La-related protein 6, RNA recognition motif
 IPR034886  La-related protein 6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000155 somite somite decreased size , abnormal
somite malformed , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0009116 slow muscle cell slow muscle cell myofibril decreased diameter , abnormal
slow muscle cell myofibril decreased amount , abnormal
slow muscle cell Z disc malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr