ENSG00000166173


Homo sapiens

Features
Gene ID: ENSG00000166173
  
Biological name :LARP6
  
Synonyms : La ribonucleoprotein domain family member 6 / LARP6 / Q9BRS8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q23
Gene start: 70829130
Gene end: 70854159
  
Corresponding Affymetrix probe sets: 218651_s_at (Human Genome U133 Plus 2.0 Array)   236565_s_at (Human Genome U133 Plus 2.0 Array)   237818_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000299213
Ensembl peptide - ENSP00000343869
Ensembl peptide - ENSP00000453551
Ensembl peptide - ENSP00000467334
NCBI entrez gene - 55323     See in Manteia.
OMIM - 611300
RefSeq - NM_001286679
RefSeq - NM_197958
RefSeq - NM_018357
RefSeq Peptide - NP_001273608
RefSeq Peptide - NP_932062
RefSeq Peptide - NP_060827
swissprot - Q9BRS8
swissprot - H0YMC6
swissprot - K7EPD2
Ensembl - ENSG00000166173
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 larp6aENSDARG00000005355Danio rerio
 LARP6ENSGALG00000004046Gallus gallus
 Larp6ENSMUSG00000034839Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LARP7 / Q4G0J3 / La ribonucleoprotein domain family member 7ENSG0000017472019


Protein motifs (from Interpro)
Interpro ID Name
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR024642  SUZ-C domain
 IPR034880  La-related protein 6, RNA recognition motif
 IPR034886  La-related protein 6
 IPR035979  RNA-binding domain superfamily
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IMP
 biological_processGO:0045727 positive regulation of translation IMP
 biological_processGO:1902416 positive regulation of mRNA binding IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005844 polysome IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017022 myosin binding IPI
 molecular_functionGO:0035613 RNA stem-loop binding IMP
 molecular_functionGO:0048027 mRNA 5"-UTR binding IMP
 molecular_functionGO:1990825 sequence-specific mRNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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