ENSMUSG00000034839


Mus musculus

Features
Gene ID: ENSMUSG00000034839
  
Biological name :Larp6
  
Synonyms : La-related protein 6 / Larp6 / Q8BN59
  
Possible biological names infered from orthology : La ribonucleoprotein domain family member 6 / Q9BRS8
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: B
Gene start: 60712989
Gene end: 60738801
  
Corresponding Affymetrix probe sets: 10586011 (MoGene1.0st)   1418400_at (Mouse Genome 430 2.0 Array)   1443028_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000040309
NCBI entrez gene - 67557     See in Manteia.
MGI - MGI:1914807
RefSeq - NM_026235
RefSeq Peptide - NP_080511
swissprot - Q8BN59
Ensembl - ENSMUSG00000034839
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 larp6aENSDARG00000005355Danio rerio
 LARP6ENSGALG00000004046Gallus gallus
 LARP6ENSG00000166173Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Larp7 / Q05CL8 / La-related protein 7 / Q4G0J3* / La ribonucleoprotein domain family member 7*ENSMUSG0000002796818
Gm12666 / LARP7* / Q4G0J3* / La ribonucleoprotein domain family member 7*ENSMUSG000000661078


Protein motifs (from Interpro)
Interpro ID Name
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR024642  SUZ-C domain
 IPR034880  La-related protein 6, RNA recognition motif
 IPR034886  La-related protein 6
 IPR035979  RNA-binding domain superfamily
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:1902416 positive regulation of mRNA binding IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005844 polysome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017022 myosin binding IEA
 molecular_functionGO:0035613 RNA stem-loop binding IEA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IEA
 molecular_functionGO:1990825 sequence-specific mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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