ENSGALG00000004046


Gallus gallus

Features
Gene ID: ENSGALG00000004046
  
Biological name :LARP6
  
Synonyms : La ribonucleoprotein domain family member 6 / LARP6
  
Possible biological names infered from orthology : La-related protein 6 / Q8BN59 / Q9BRS8
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 6186114
Gene end: 6192701
  
Corresponding Affymetrix probe sets: Gga.18371.1.S1_s_at (Chicken Array)   GgaAffx.26094.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000058116
Ensembl peptide - ENSGALP00000006430
NCBI entrez gene - 415392     See in Manteia.
RefSeq - XM_015278973
RefSeq - XM_015278970
swissprot - F1NWE6
swissprot - A0A1D5PYR1
Ensembl - ENSGALG00000004046
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 larp6aENSDARG00000005355Danio rerio
 LARP6ENSG00000166173Homo sapiens
 Larp6ENSMUSG00000034839Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LARP6L / Gallus gallus La ribonucleoprotein domain family member 6-like (LARP6L), mRNA.ENSGALG0000004497027
LARP7 / La ribonucleoprotein domain family member 7 / Q05CL8* / Q4G0J3* / Gm12666* / La-related protein 7 *ENSGALG0000001204819


Protein motifs (from Interpro)
Interpro ID Name
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR024642  SUZ-C domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:1902416 positive regulation of mRNA binding IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005844 polysome IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0017022 myosin binding IEA
 molecular_functionGO:0035613 RNA stem-loop binding IEA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IEA
 molecular_functionGO:1990825 sequence-specific mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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