ENSDARG00000003984


Danio rerio

Features
Gene ID: ENSDARG00000003984
  
Biological name :LTN1
  
Synonyms : LTN1 / si:dkey-175g6.5
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase listerin / listerin E3 ubiquitin protein ligase 1 / O94822 / Q6A009
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 23099365
Gene end: 23143104
  
Corresponding Affymetrix probe sets: Dr.13250.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000013392
Ensembl peptide - ENSDARP00000116512
NCBI entrez gene - 100000122     See in Manteia.
swissprot - E7F4K2
swissprot - E9QBD2
ZFIN ID - ZDB-GENE-091204-127
Ensembl - ENSDARG00000003984
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LTN1ENSGALG00000015804Gallus gallus
 LTN1ENSG00000198862Homo sapiens
 Ltn1ENSMUSG00000052299Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR011016  Zinc finger, RING-CH-type
 IPR011989  Armadillo-like helical
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr