ENSDARG00000004574


Danio rerio

Features
Gene ID: ENSDARG00000004574
  
Biological name :gtf3c2
  
Synonyms : general transcription factor IIIC, polypeptide 2, beta / gtf3c2
  
Possible biological names infered from orthology : general transcription factor IIIC subunit 2 / Gm29609 / Q8BL74 / Q8WUA4 / ral transcription factor 3C polypeptide 2
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 38543314
Gene end: 38584161
  
Corresponding Affymetrix probe sets: Dr.14846.1.S1_at (Zebrafish Array)   NM_001045018_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000008672
Ensembl peptide - ENSDARP00000092036
Ensembl peptide - ENSDARP00000115569
Ensembl peptide - ENSDARP00000127096
NCBI entrez gene - 563394     See in Manteia.
RefSeq - NM_001045018
RefSeq - XM_005160828
RefSeq Peptide - NP_001038483
swissprot - Q5RHA1
swissprot - Q5RHA2
swissprot - F1R215
ZFIN ID - ZDB-GENE-041014-349
Ensembl - ENSDARG00000004574
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF3C2ENSGALG00000031281Gallus gallus
 GTF3C2ENSG00000115207Homo sapiens
 Gm29609ENSMUSG00000101678Mus musculus
 Gtf3c2ENSMUSG00000106864Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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