ENSDARG00000004643


Danio rerio

Features
Gene ID: ENSDARG00000004643
  
Biological name :cdhr1a
  
Synonyms : cadherin-related family member 1a / cdhr1a / Q6B3P0
  
Possible biological names infered from orthology : cadherin related family member 1 / CDHR1 / Q8VHP6 / Q96JP9
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 29480010
Gene end: 29505946
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000026292
Ensembl peptide - ENSDARP00000101442
NCBI entrez gene - 449008     See in Manteia.
RefSeq - NM_001005402
RefSeq Peptide - NP_001005402
swissprot - G1K2I7
swissprot - Q6B3P0
ZFIN ID - ZDB-GENE-040924-4
Ensembl - ENSDARG00000004643
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDHR1ENSGALG00000002314Gallus gallus
 CDHR1ENSG00000148600Homo sapiens
 Cdhr1ENSMUSG00000021803Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDHR1 (1 of many) / cadherin related family member 1 / CDHR1* / Q96JP9*ENSDARG0000010475655
CDHR2 / cadherin related family member 2 / E9Q7P9* / Q9BYE9*ENSDARG0000006858625


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr