ENSMUSG00000021803


Mus musculus

Features
Gene ID: ENSMUSG00000021803
  
Biological name :Cdhr1
  
Synonyms : Cadherin-related family member 1 / Cdhr1 / Q8VHP6
  
Possible biological names infered from orthology : Q96JP9
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: B
Gene start: 37077857
Gene end: 37098347
  
Corresponding Affymetrix probe sets: 10419015 (MoGene1.0st)   1418304_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022337
NCBI entrez gene - 170677     See in Manteia.
MGI - MGI:2157782
RefSeq - NM_130878
RefSeq Peptide - NP_570948
swissprot - Q8VHP6
Ensembl - ENSMUSG00000021803
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDHR1 (1 of many)ENSDARG00000104756Danio rerio
 cdhr1aENSDARG00000004643Danio rerio
 CDHR1ENSGALG00000002314Gallus gallus
 CDHR1ENSG00000148600Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cdhr2 / E9Q7P9 / Cadherin-related family member 2 / Q9BYE9*ENSMUSG0000003491827


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0008594 photoreceptor cell morphogenesis IEA
 biological_processGO:0009987 cellular process IMP
 biological_processGO:0035845 photoreceptor cell outer segment organization IEA
 biological_processGO:0045494 photoreceptor cell maintenance IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042622 photoreceptor outer segment membrane IDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001325 abnormal retina morphology "structural or developmental anomaly of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator]
Show

Allelic Composition: Ift88Tg737Rpw/Ift88Tg737Rpw
Genetic Background: involves: FVB/N

 MP:0001326 retinal degeneration "pathological change in the thin layer of neural tissue lining the back of the eyeball, which contains visual receptors and can result in the impairment or cessation of retinal neural function" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, NMF:Stephanie Pretel, Neuroscience Mutagenesis Facility Curator]
Show

Allelic Composition: Ift88Tg737Rpw/Ift88Tg737Rpw
Genetic Background: involves: FVB/N

 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Hcn4tm1Sev/?
Genetic Background: Not Specified

 MP:0005551 abnormal eye electrophysiology "abnormal function of the eye as determined through electrophysiological recordings from single cells or summary recordings from multiple cells (e.g. electroretinogram)" [NMF:Stephanie Pretel, Neuroscience Mutagenesis Facility Curator]
Show

Allelic Composition: Ift88Tg737Rpw/Ift88Tg737Rpw
Genetic Background: involves: FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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