ENSDARG00000004757


Danio rerio

Features
Gene ID: ENSDARG00000004757
  
Biological name :ybx1
  
Synonyms : Y box binding protein 1 / ybx1
  
Possible biological names infered from orthology : P62960 / P67809 / Y box protein 1
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 47143829
Gene end: 47152086
  
Corresponding Affymetrix probe sets: Dr.1161.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000010482
Ensembl peptide - ENSDARP00000135135
Ensembl peptide - ENSDARP00000101517
NCBI entrez gene - 795398     See in Manteia.
RefSeq - NM_001126457
RefSeq - NM_131620
RefSeq Peptide - NP_001119929
RefSeq Peptide - NP_571695
swissprot - B5DE31
swissprot - A1A605
swissprot - A0A0R4IK84
swissprot - F1RB19
ZFIN ID - ZDB-GENE-000629-3
Ensembl - ENSDARG00000004757
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YBX1ENSGALG00000004848Gallus gallus
 YBX1ENSG00000065978Homo sapiens
 Ybx1ENSMUSG00000028639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002059  Cold-shock protein, DNA-binding
 IPR011129  Cold shock domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR019844  Cold-shock conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045947 negative regulation of translational initiation IMP
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IMP
 biological_processGO:0050686 negative regulation of mRNA processing IMP
 biological_processGO:0051236 establishment of RNA localization IMP
 biological_processGO:1900364 negative regulation of mRNA polyadenylation IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0008190 eukaryotic initiation factor 4E binding IDA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Noncanonical activation of NOTCH3


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000088 YSL YSL nucleus increased amount , abnormal
Show

 ZFA:0000093 blastomere blastomere RNA localization delayed , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased life span , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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